Basic Information
Locus ID:
Oco12G015040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 20041272 | 20042383 | - | Oco12G015040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 35,977.85 Da | 41.34 | 90.74 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 25 | 113 | 3.14453E-5 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 158 | 229 | 2.6E-9 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 159 | 227 | 1.06E-11 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 116 | 4.09E-5 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 153 | 231 | 5.3E-15 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 232 | 304 | 2.8E-15 | - |
| SMART | SM00225 | BTB_4 | 110 | 232 | 0.0013 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_025882225.1 | BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0E561 | BTB domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology