Basic Information
Locus ID:
Oco12G014900
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
protein UNUSUAL FLORAL
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 19885803 | 19888947 | - | Oco12G014900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 49,818.08 Da | 60.27 | 94.32 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 97 | 2.09E-6 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 136 | 401 | 3.27E-9 | IPR011043 |
| Gene3D | G3DSA:2.120.10.80 | - | 219 | 414 | 2.1E-5 | IPR015915 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 26 | 72 | 9.312009 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30950.1 | F-box family protein. Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY. | 0 |
| RefSeq | XP_015693670.2 | protein ABERRANT PANICLE ORGANIZATION 1 [Oryza brachyantha] | 0 |
| Q655Y0 | Protein ABERRANT PANICLE ORGANIZATION 1 OS=Oryza sativa subsp. japonica OX=39947 GN=APO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CXR9 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_038704 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20934 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5037 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007976 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086600 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg19250 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5504 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006812 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23242, Sgl28312 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011463, gene:ENSEOMG00000027763 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0019130 |
| Apiaceae | Apium graveolens | 1 | Ag9G02528 |
| Arecaceae | Cocos nucifera | 1 | scaffold045712G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721086, gene-LOC120104236 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G19696 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G30950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009319m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g26810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g019740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0082 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0100 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g03310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g23630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.331 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012900 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2587, BH06.2388, CH06.2605 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0547510, gene-QOZ80_6BG0501140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0738310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036336 |
| Poaceae | Oryza coarctata | 2 | Oco11G014780, Oco12G014900 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g35740.1, LOC_Os06g45460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G219400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G031510, Chr05G009350, Chr10G019810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G816900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG067090, gene_TRIDC7BG060970 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G481600.1, TraesCS7B02G384000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb274390_P001, Zm00001eb389810_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-40506, nbis-gene-55955, nbis-gene-9812 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33222 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.219, evm.TU.LG04.533 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1524 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26216 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15057 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4352 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.324 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9640 |
| Salicaceae | Populus euphratica | 2 | populus_peu02974, populus_peu33854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625109 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010731, gene-LOC107019684 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11695 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22530.v3.1 |