Basic Information
Locus ID:
Oco12G014410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 19307916 | 19314110 | - | Oco12G014410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 105,392.35 Da | 50.81 | 64.23 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 122 | 428 | 1.69341E-166 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 123 | 427 | 9.2E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 24 | 61 | 5.7E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 22 | 66 | 4.19E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 120 | 443 | 3.73E-86 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 12 | 68 | 1.1E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 120 | 436 | 6.6E-91 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 24 | 61 | 12.190331 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 123 | 430 | 48.686508 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 24 | 61 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 124 | 139 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_015643085.1 | ubiquitin carboxyl-terminal hydrolase 15 [Oryza sativa Japonica Group] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A3BE67 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_22202 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology