halophFGD

Basic Information

Locus ID: Oco12G012700

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG12	17467689	17468874	+	Oco12G012700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.04	38,898.53 Da	57.45	92.38	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	4	47	1.9E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	88	4.97E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	3	43	5.2E-7	-
ProSiteProfiles	PS50181	F-box domain profile.	1	48	10.689717	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021318649.1	uncharacterized protein LOC8080290 [Sorghum bicolor]	0
TrEMBL	A0A8T0W8E5	FBA_3 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG003300 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	4	AH07.1122, BH03.150, BH07.1201, CH07.979
Poaceae	Oryza coarctata	1	Oco12G012700