Basic Information
Locus ID:
Oco12G012610
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 17340367 | 17343612 | + | Oco12G012610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 68,416.69 Da | 44.70 | 106.16 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 275 | 297 | 0.88 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 516 | 635 | 5.57E-17 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 309 | 558 | 2.2E-30 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 171 | 296 | 4.97E-20 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 62 | 102 | 4.06E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 456 | 651 | 3.1E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 61 | 298 | 1.4E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 299 | 455 | 3.2E-20 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 275 | 300 | 0.58 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 514 | 539 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 487 | 512 | 0.013 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 541 | 566 | 0.51 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 355 | 380 | 2.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 249 | 274 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 461 | 486 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 223 | 248 | 1.1E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 197 | 222 | 0.021 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 407 | 432 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 381 | 406 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 567 | 591 | 13.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_040380786.1 | EIN3-binding F-box protein 1-like [Oryza brachyantha] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CU97 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology