Basic Information
Locus ID:
Oco12G011400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 15624866 | 15632685 | + | Oco12G011400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 57,847.57 Da | 48.18 | 74.07 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 235 | 271 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 379 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 51 | 516 | 9.62E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 206 | 2.0E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 345 | 521 | 1.8E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 344 | 6.9E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 383 | 437 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 78 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 322 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 156 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 379 | 66.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 22 | 523 | 1.3E-194 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 116 | 130 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 241 | 255 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 271 | 298 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 132 | 160 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 384 | 409 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 356 | 383 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 492 | 521 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 328 | 355 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 243 | 270 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 410 | 436 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 57 | 77 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 103 | 131 | 1.6E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 299 | 327 | 1.6E-155 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_052158964.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 [Oryza glaberrima] | 0 |
| Q5Z8Z7 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0563300 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1CNU3 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_006461 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology