halophFGD

Basic Information

Locus ID: Oco12G010580

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Amino acid permease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG12	14370158	14372056	+	Oco12G010580

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.38	53,314.11 Da	34.09	100.99	0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13520	Amino acid permease	199	379	4.4E-16	IPR002293
Pfam	PF13906	C-terminus of AA_permease	428	477	1.4E-15	IPR029485
Pfam	PF13520	Amino acid permease	79	153	1.2E-7	IPR002293
Gene3D	G3DSA:1.20.1740.10	Amino acid/polyamine transporter I	193	398	9.2E-32	-
Gene3D	G3DSA:1.20.1740.10	Amino acid/polyamine transporter I	75	187	3.6E-20	-
PIRSF	PIRSF006060	AA_transporter	197	494	6.7E-25	-
PIRSF	PIRSF006060	AA_transporter	57	170	1.4E-21	-

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03294 (basic amino acid/polyamine antiporter, APA family)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17120.1	cationic amino acid transporter 8. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.
RefSeq	XP_040381029.1	cationic amino acid transporter 8, vacuolar-like [Oryza brachyantha]
Swiss-Prot	Q9SHH0	Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana OX=3702 GN=CAT8 PE=2 SV=1
TrEMBL	A0A0E0LCC9	AA_permease_C domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg19207, jg20812, jg22319, jg3931
Aizoaceae	Mesembryanthemum crystallinum	5	gene_12647, gene_22589, gene_22592, gene_4933, gene_5004
Amaranthaceae	Atriplex hortensis	3	Ah007231, Ah007234, Ah016437
Amaranthaceae	Beta vulgaris	3	BVRB_5g118540, BVRB_8g187560, BVRB_8g187580
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19030, Sbi_jg25686, Sbi_jg25687, Sbi_jg32654 ... Sbi_jg37458, Sbi_jg9522, Sbi_jg9523
Amaranthaceae	Salicornia europaea	4	Seu_jg19107, Seu_jg19108, Seu_jg5301, Seu_jg7647
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001681, GOSA_00013805, GOSA_00015293, GOSA_00016596
Amaranthaceae	Suaeda glauca	10	Sgl21021, Sgl22376, Sgl25660, Sgl26377, Sgl27625, Sgl30811 ... Sgl44465, Sgl49215, Sgl71646, Sgl75221
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006817, gene:ENSEOMG00000009979 ... gene:ENSEOMG00000011499, gene:ENSEOMG00000012329, gene:ENSEOMG00000028203, gene:ENSEOMG00000042226, gene:ENSEOMG00000043181, gene:ENSEOMG00000045097
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0015680, CQ.Regalona.r1.4BG0016880 ... CQ.Regalona.r1.4BG0021750, CQ.Regalona.r1.8AG0010440, CQ.Regalona.r1.8BG0011960
Anacardiaceae	Pistacia vera	2	pistato.v30076150, pistato.v30199130
Apiaceae	Apium graveolens	4	Ag3G02450, Ag7G00977, Ag7G00979, Ag7G01118
Arecaceae	Cocos nucifera	7	COCNU_02G002670, COCNU_06G020590, COCNU_06G020600 ... COCNU_12G000550, COCNU_14G008750, COCNU_14G008760, scaffold115654G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103701403, gene-LOC103703712, gene-LOC103710508 ... gene-LOC103715963, gene-LOC103715964, gene-LOC103720583, gene-LOC120108687
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2495.V1.1, AsparagusV1_06.12.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G07092, Ftri17G12312, Ftri17G29035, Ftri3G07973 ... Ftri8G28433
Brassicaceae	Arabidopsis thaliana	3	AT1G17120.1, AT2G34960.1, AT4G21120.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007175m.g.v1.0, Thhalv10016446m.g.v1.0 ... Thhalv10024732m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15240.v2.2, Sp4g17250.v2.2, Sp7g19210.v2.2
Brassicaceae	Brassica nigra	4	BniB01g009340.2N, BniB02g070810.2N, BniB03g022290.2N ... BniB03g027320.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq04G0069, Ceq04G0072, Ceq04G0541, Ceq04G0542, Ceq05G0582 ... Ceq05G2034
Casuarinaceae	Casuarina glauca	4	Cgl04G0092, Cgl04G0639, Cgl05G0605, Cgl07G2535
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno09g10080, gene.Cymno11g07960, gene.Cymno13g02420
Dunaliellaceae	Dunaliella salina	1	Dusal.0560s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g00750, gene.Thate04g00780, gene.Thate04g06300 ... gene.Thate05g14940
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG12.153, evm.TU.LG12.314, evm.TU.LG12.315 ... evm.TU.LG12.319
Plantaginaceae	Plantago ovata	4	Pov_00003562, Pov_00008372, Pov_00013063, Pov_00038550
Plumbaginaceae	Limonium bicolor	6	Lb2G15187, Lb2G15189, Lb2G15190, Lb2G15196, Lb7G34670 ... Lb7G34689
Poaceae	Echinochloa crus-galli	19	AH01.1258, AH01.2728, AH02.230, AH05.4044, AH05.4045 ... AH05.4046, AH05.4047, AH06.1912, BH01.1465, BH01.1466, BH01.3061, BH02.239, BH05.4147, BH06.1756, CH01.3282, CH02.255, CH05.4368, CH06.1948, CH06.2663
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1BG0050780, gene-QOZ80_3AG0224340 ... gene-QOZ80_3BG0269340, gene-QOZ80_5AG0397880, gene-QOZ80_6AG0542150, gene-QOZ80_6BG0495390
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0191460.1.CDS1 ... HORVU.MOREX.r3.3HG0246190.1.CDS1, HORVU.MOREX.r3.5HG0428960.1, HORVU.MOREX.r3.5HG0489610.1.CDS1, HORVU.MOREX.r3.5HG0508440.1
Poaceae	Lolium multiflorum	7	gene-QYE76_001024, gene-QYE76_006044, gene-QYE76_046257 ... gene-QYE76_047943, gene-QYE76_051176, gene-QYE76_063524, gene-QYE76_063525
Poaceae	Oryza coarctata	7	Oco01G004850, Oco02G004850, Oco05G018840, Oco06G019630 ... Oco12G010580, Oco23G010350, Oco24G010200
Poaceae	Oryza sativa	5	LOC_Os01g11160.1, LOC_Os03g43970.1, LOC_Os03g43980.1 ... LOC_Os06g34830.1, LOC_Os12g41890.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G144900, gene-BS78_03G021500 ... gene-BS78_04G307600, gene-BS78_05G146700, gene-BS78_08G146400, gene-BS78_10G157200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0301272, Pt_Chr0701667, Pt_Chr0704433
Poaceae	Sporobolus alterniflorus	9	Chr01G009430, Chr02G028070, Chr02G028570, Chr05G005770 ... Chr05G006270, Chr06G011310, Chr06G019860, Chr10G015870, Chr12G027590
Poaceae	Thinopyrum elongatum	4	Tel2E01G723700, Tel5E01G099200, Tel5E01G410800 ... Tel5E01G597300
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG061430, gene_TRIDC2BG065140 ... gene_TRIDC5AG006550, gene_TRIDC5AG054960, gene_TRIDC5BG007640
Poaceae	Triticum aestivum	14	TraesCS2A02G425919.1.cds1, TraesCS2B02G446235.1.cds1 ... TraesCS2D02G423900.1.cds1, TraesCS3A02G133100.1.cds1, TraesCS3B02G166500.1.cds1, TraesCS3D02G149300.1.cds1, TraesCS5A02G042900.1, TraesCS5A02G256600.1.cds1, TraesCS5A02G375600.1, TraesCS5B02G046500.1, TraesCS5B02G256000.1.cds1, TraesCS5D02G051400.1, TraesCS5D02G265100.1.cds1, TraesCS5D02G385125.1
Poaceae	Zea mays	4	Zm00001eb050630_P001, Zm00001eb120240_P001 ... Zm00001eb136100_P001, Zm00001eb277830_P001
Poaceae	Zoysia japonica	6	nbis-gene-10283, nbis-gene-19335, nbis-gene-24369 ... nbis-gene-32632, nbis-gene-39602, nbis-gene-44525
Poaceae	Zoysia macrostachya	6	Zma_g25333, Zma_g30662, Zma_g32900, Zma_g7257, Zma_g873 ... Zma_g9584
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2223, evm.TU.LG01.859, evm.TU.LG06.841 ... evm.TU.LG11.16, evm.TU.LG13.945, evm.TU.LG14.1399, evm.TU.LG19.415, evm.TU.LG21.607, evm.TU.LG23.152, evm.TU.LG24.145
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g23790, gene.Posoc08g07290, gene.Posoc10g05030
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.957, evm.TU.Scaffold_14_RagTag.958 ... evm.TU.Scaffold_16_RagTag.863, evm.TU.Scaffold_4_RagTag.1528, evm.TU.Scaffold_6_RagTag.1008
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-15654, nbisL1-mrna-16730, nbisL1-mrna-16731 ... nbisL1-mrna-16805, nbisL1-mrna-16806, nbisL1-mrna-25034, nbisL1-mrna-25035, nbisL1-mrna-26212
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11446, nbisL1-mrna-13963, nbisL1-mrna-19453 ... nbisL1-mrna-19454, nbisL1-mrna-5232
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-17260, nbisL1-mrna-17261, nbisL1-mrna-19227 ... nbisL1-mrna-4357, nbisL1-mrna-861
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.326, add.evm.TU.utg000011l.242 ... add.evm.TU.utg000025l.55, evm.TU.utg000022l.59, evm.TU.utg000025l.122
Rhizophoraceae	Kandelia obovata	4	Maker00000634, Maker00008243, Maker00012273, Maker00016189
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17578, nbisL1-mrna-20177, nbisL1-mrna-22267 ... nbisL1-mrna-56, nbisL1-mrna-8644
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10286, nbisL1-mrna-3572, nbisL1-mrna-9173 ... nbisL1-mrna-9174, nbisL1-mrna-9635
Salicaceae	Populus euphratica	7	populus_peu00678, populus_peu29190, populus_peu30547 ... populus_peu34666, populus_peu37516, populus_peu38149, populus_peu38158
Solanaceae	Lycium barbarum	5	gene-LOC132601915, gene-LOC132621762, gene-LOC132623046 ... gene-LOC132625192, gene-LOC132636527
Solanaceae	Solanum chilense	5	SOLCI000152600, SOLCI000768200, SOLCI001265500 ... SOLCI003092800, SOLCI006925700
Solanaceae	Solanum pennellii	5	gene-LOC107005389, gene-LOC107006577, gene-LOC107010806 ... gene-LOC107011810, gene-LOC107011849
Tamaricaceae	Reaumuria soongarica	4	gene_16603, gene_2525, gene_510, gene_6278
Tamaricaceae	Tamarix chinensis	3	TC01G0289, TC05G0410, TC07G2203
Zosteraceae	Zostera marina	2	Zosma03g23710.v3.1, Zosma256g00020.v3.1