Basic Information
Locus ID:
Oco12G010460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 14199140 | 14199934 | + | Oco12G010460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 21,266.65 Da | 49.29 | 105.24 | 0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 136 | 178 | 2.03008E-18 | - |
| Pfam | PF13639 | Ring finger domain | 136 | 178 | 4.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 185 | 3.03E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 184 | 1.6E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 136 | 177 | 8.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 178 | 12.54829 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_015642571.1 | probable E3 ubiquitin-protein ligase ATL45 [Oryza sativa Japonica Group] | 0 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CS14 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_019869 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology