Basic Information
Locus ID:
Oco12G010440
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 14179377 | 14180096 | + | Oco12G010440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 24,629.75 Da | 61.45 | 79.71 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 97 | 137 | 1.315E-16 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 137 | 4.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 139 | 3.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 141 | 2.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 95 | 136 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 137 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 239 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052157603.1 | RING-H2 finger protein ATL65-like [Oryza glaberrima] | 0 |
| Q9C7I1 | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1F573 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_007799 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1880, CH06.1923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541850, gene-QOZ80_6BG0495050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709240.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034106 |
| Poaceae | Oryza coarctata | 2 | Oco02G015940, Oco12G010440 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400173 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028420, Chr05G006110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048590, gene_TRIDC7BG038780 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G234600.1.cds1, TraesCS7D02G330600.1.cds1 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30646 |