Basic Information
Locus ID:
Oco12G009730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 12721138 | 12726197 | - | Oco12G009730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 27,612.13 Da | 49.01 | 70.16 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 22 | 249 | 4.4E-81 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 132 | 239 | 1.08E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 133 | 251 | 8.5E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 138 | 240 | 25.537588 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_006656052.2 | auxin-responsive protein IAA21 [Oryza brachyantha] | 0 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CW92 | Auxin-responsive protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033405 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology