Basic Information
Locus ID:
Oco12G009620
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 12527283 | 12529783 | + | Oco12G009620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 50,736.64 Da | 46.59 | 82.25 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 225 | 279 | 9.78354E-11 | - |
| Pfam | PF12906 | RING-variant domain | 225 | 278 | 1.9E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 282 | 4.71E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 285 | 1.4E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 224 | 279 | 7.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 217 | 285 | 18.40052 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 475 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006656056.1 | uncharacterized protein LOC102711074 [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1CXW9 | RING-CH-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology