Basic Information
Locus ID:
Oco12G007170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
NAC domain transcription factor superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 7639127 | 7643901 | + | Oco12G007170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 46,260.17 Da | 44.52 | 70.00 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 58 | 196 | 3.0E-22 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 42 | 215 | 9.02E-38 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 66 | 219 | 3.9E-30 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 57 | 215 | 30.669287 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 305 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_006655990.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like [Oryza brachyantha] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | J3MD49 | NAC domain-containing protein OS=Oryza brachyantha OX=4533 GN=102715669 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology