Basic Information
Locus ID:
Oco12G007050
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 7539474 | 7544660 | + | Oco12G007050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 43,371.20 Da | 51.27 | 86.07 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 6.19726E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.3E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 162 | 200 | 4.2E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 366 | 401 | 5.2E-10 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 284 | 339 | 4.0E-19 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 149 | 206 | 2.89E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 8.29E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 348 | 407 | 2.43E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 281 | 345 | 2.75E-19 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.6E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 155 | 205 | 1.4E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 274 | 340 | 4.5E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 358 | 404 | 2.2E-21 | - |
| SMART | SM00165 | uba_6 | 162 | 202 | 3.9E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 366 | 403 | 5.4E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.7E-20 | IPR000626 |
| SMART | SM00727 | CBM | 280 | 325 | 4.3E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 409 | 1.4E-106 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.628063 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 160 | 203 | 12.884254 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 363 | 404 | 14.619245 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 392 | 407 | 2.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 391 | 2.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 310 | 332 | 2.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 376 | 2.8E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 252 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052159049.1 | ubiquitin receptor RAD23d-like isoform X1 [Oryza glaberrima] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0A7W2 | Ubiquitin receptor RAD23 OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology