Basic Information
Locus ID:
Oco12G006660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 6864142 | 6865574 | + | Oco12G006660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 47,622.50 Da | 43.65 | 97.03 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 44 | 85 | 3.39193E-20 | - |
| Pfam | PF04564 | U-box domain | 40 | 111 | 2.6E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 206 | 429 | 2.82E-15 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 115 | 1.15E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 117 | 5.7E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 122 | 446 | 3.0E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 43 | 106 | 6.3E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 39 | 113 | 31.448229 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_015643734.1 | U-box domain-containing protein 21 [Oryza sativa Japonica Group] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CX70 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037146 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology