Basic Information
Locus ID:
Oco12G005920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 5949677 | 5953693 | + | Oco12G005920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 88,960.31 Da | 43.70 | 86.65 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 320 | 346 | 0.0038 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 126 | 158 | 4.7E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 286 | 315 | 9.1E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 193 | 213 | 0.051 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 412 | 434 | 0.46 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 161 | 184 | 8.6E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 248 | 277 | 1.4E-4 | IPR002885 |
| Pfam | PF02042 | RWP-RK domain | 671 | 718 | 3.1E-20 | IPR003035 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 222 | 317 | 1.5E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 34 | 221 | 7.1E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 318 | 567 | 7.1E-24 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 129 | 157 | 8.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 286 | 315 | 8.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 161 | 183 | 2.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 248 | 279 | 5.2E-5 | IPR002885 |
| ProSiteProfiles | PS51519 | RWP-RK domain profile. | 654 | 738 | 19.099209 | IPR003035 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 284 | 318 | 10.687325 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 127 | 161 | 12.101333 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 246 | 280 | 10.950397 | IPR002885 |
| Coils | Coil | Coil | 737 | 757 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62260.1 | mitochondrial editing factor 9. Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing. | 0 |
| RefSeq | XP_025882382.1 | pentatricopeptide repeat-containing protein At1g62260, mitochondrial isoform X1 [Oryza sativa Japonica Group] | 0 |
| O04590 | Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0HMZ9 | RWP-RK domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology