Basic Information
Locus ID:
Oco12G004670
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 4391151 | 4393234 | - | Oco12G004670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 26,478.01 Da | 32.74 | 91.00 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 71 | 207 | 1.9E-24 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 46 | 207 | 1.94E-40 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 150 | 227 | 1.0E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 26 | 149 | 3.7E-32 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 67 | 239 | 20.895012 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 193 | 205 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05940.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006655891.2 | serine/threonine-protein kinase RIPK-like [Oryza brachyantha] | 0 |
| Q9ZUF4 | Serine/threonine-protein kinase RIPK OS=Arabidopsis thaliana OX=3702 GN=RIPK PE=1 SV=1 | 0 | |
| TrEMBL | B9FS13 | Protein kinase domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_20496 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g25850 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16414 |
| Poaceae | Oryza coarctata | 1 | Oco12G004670 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG020320 |
| Poaceae | Zea mays | 1 | Zm00001eb256760_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-30695, nbis-gene-40007, nbis-gene-57212 ... |
| Zosteraceae | Zostera marina | 1 | Zosma01g31040.v3.1 |