Basic Information
Locus ID:
Oco12G004370
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 3957356 | 3960316 | - | Oco12G004370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 67,012.07 Da | 38.53 | 94.01 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 68 | 233 | 1.1E-20 | IPR002035 |
| Pfam | PF04535 | Domain of unknown function (DUF588) | 482 | 589 | 9.0E-13 | IPR006702 |
| SUPERFAMILY | SSF53300 | vWA-like | 66 | 236 | 3.8E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 68 | 237 | 1.2E-34 | IPR036465 |
| SMART | SM00327 | VWA_4 | 66 | 236 | 2.7E-22 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 68 | 235 | 17.226624 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_052165237.1 | E3 ubiquitin-protein ligase WAV3-like [Oryza glaberrima] | 0 |
| C5XEK4 | CASP-like protein 4U1 OS=Sorghum bicolor OX=4558 GN=Sb03g029220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1D2T6 | VWFA domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012527 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology