Basic Information
Locus ID:
Oco12G004280
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 3806911 | 3808206 | + | Oco12G004280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 34,612.37 Da | 63.10 | 75.58 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 116 | 159 | 1.67122E-20 | - |
| Pfam | PF13639 | Ring finger domain | 116 | 159 | 7.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 165 | 3.28E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 163 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 117 | 158 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 159 | 12.149959 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 328 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040381284.1 | RING-H2 finger protein ATL3-like [Oryza brachyantha] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CPC9 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011848 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology