Basic Information
Locus ID:
Oco12G003800
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 3365344 | 3372235 | + | Oco12G003800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 54,902.83 Da | 55.87 | 67.93 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 124 | 176 | 2.05143E-29 | - |
| Pfam | PF00412 | LIM domain | 124 | 179 | 1.2E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 273 | 479 | 3.0E-102 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 116 | 149 | 6.56E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 150 | 205 | 2.28E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 118 | 198 | 5.6E-15 | - |
| SMART | SM00726 | uim | 77 | 96 | 0.026 | IPR003903 |
| SMART | SM00726 | uim | 46 | 65 | 0.054 | IPR003903 |
| SMART | SM00132 | lim_4 | 123 | 175 | 1.5E-11 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 9.881678 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 122 | 182 | 12.1177 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 10.218639 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 124 | 158 | - | IPR001781 |
| Coils | Coil | Coil | 60 | 80 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_006655851.1 | protein DA1-related 1 isoform X1 [Oryza brachyantha] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | Q0DE24 | LIM domain containing protein-like OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0182500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology