Basic Information
Locus ID:
Oco12G003280
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 2910219 | 2911044 | + | Oco12G003280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 20,817.45 Da | 49.87 | 85.30 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 54 | 2.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 82 | 4.32E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 53 | 2.5E-6 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 3.8E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 57 | 9.68293 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47300.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_040380798.1 | F-box/LRR-repeat/kelch-repeat protein At1g09650-like [Oryza brachyantha] | 0 |
| Q9LVS9 | Probable F-box protein At5g47300 OS=Arabidopsis thaliana OX=3702 GN=At5g47300 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6G1CN90 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_003587 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology