Basic Information
Locus ID:
Oco12G002920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 2612079 | 2617051 | - | Oco12G002920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 90,415.31 Da | 50.03 | 88.42 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 728 | 769 | 2.05309E-24 | - |
| Pfam | PF13414 | TPR repeat | 153 | 188 | 3.1E-7 | - |
| Pfam | PF04564 | U-box domain | 724 | 795 | 2.4E-19 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 440 | 648 | 1.5E-43 | IPR000719 |
| SUPERFAMILY | SSF48452 | TPR-like | 145 | 257 | 6.54E-37 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 6 | 134 | 2.47E-28 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 714 | 797 | 2.12E-27 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 413 | 693 | 1.75E-69 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 4 | 139 | 2.6E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 140 | 274 | 6.0E-33 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 510 | 721 | 7.9E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 416 | 509 | 3.3E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 722 | 798 | 4.0E-30 | IPR013083 |
| SMART | SM00028 | tpr_5 | 7 | 40 | 470.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 41 | 74 | 0.72 | IPR019734 |
| SMART | SM00028 | tpr_5 | 146 | 179 | 4.6E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 214 | 247 | 0.032 | IPR019734 |
| SMART | SM00028 | tpr_5 | 180 | 213 | 0.071 | IPR019734 |
| SMART | SM00220 | serkin_6 | 437 | 708 | 8.0E-34 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 727 | 790 | 1.4E-29 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 437 | 703 | 35.212753 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 723 | 797 | 39.860489 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 146 | 179 | 9.4699 | IPR019734 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 443 | 464 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 555 | 567 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 152 | - | - |
| Coils | Coil | Coil | 333 | 367 | - | - |
| Coils | Coil | Coil | 118 | 148 | - | - |
| Coils | Coil | Coil | 284 | 311 | - | - |
| Coils | Coil | Coil | 389 | 409 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_015644198.1 | U-box domain-containing protein 70-like [Oryza sativa Japonica Group] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | B8B376 | RING-type E3 ubiquitin transferase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_21792 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |