Basic Information
Locus ID:
Oco12G002800
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 2529101 | 2532794 | - | Oco12G002800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 24,058.60 Da | 38.11 | 67.31 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14316 | UBA2_UBAP1_like | 184 | 220 | 1.4744E-11 | - |
| Gene3D | G3DSA:1.20.120.1920 | UBAP1 SOUBA domain | 152 | 223 | 6.3E-7 | IPR042575 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 143 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53330.1 | Ubiquitin-associated/translation elongation factor EF1B protein. | 0 |
| RefSeq | XP_015642924.1 | splicing factor 1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1CN16 | UBA domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_003515 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13919, jg2221 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3269 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018733 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15157, Sbi_jg55992 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019995 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01434, Sgl06596, Sgl06603 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000977, gene:ENSEOMG00000028950 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004200, CQ.Regalona.r1.3BG0004320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30184770 |
| Apiaceae | Apium graveolens | 1 | Ag10G02551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713487 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2713.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G03981 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014603m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g031630.2N, BniB08g016680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1547 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1645 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g02950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2832 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04254 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.334, BH06.440, CH06.442 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509800, gene-QOZ80_6BG0461860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0654600.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G002890, Oco12G002800 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G051200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402142 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022370, Chr14G002180, Chr21G001290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G239300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG002860 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G120000.1, TraesCS7B02G018300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb376120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40454 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29148 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1939 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g23030, gene.Posoc09g08440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.58 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12750, nbisL1-mrna-29281 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3114 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2218, nbisL1-mrna-22469 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.33, evm.TU.utg000010l.421 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000398 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1128, nbisL1-mrna-2315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6335 |
| Salicaceae | Populus euphratica | 2 | populus_peu28121, populus_peu29573 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632015, gene-LOC132639520 |
| Solanaceae | Solanum chilense | 1 | SOLCI007262100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015117 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5243 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2274 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25000.v3.1 |