Basic Information
Locus ID:
Oco12G001580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ribosomal protein S20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 1425695 | 1427749 | - | Oco12G001580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 14,178.37 Da | 39.19 | 81.33 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 30 | 124 | 8.5E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 28 | 125 | 1.7E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 14 | 127 | 1.5E-47 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 30 | 124 | 5.8E-39 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 27 | 125 | 3.7E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 52 | 67 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 85 | 99 | 2.6E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 63 | 78 | 2.6E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 28 | 41 | 2.6E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 26 | 125 | 18.795275 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_006655758.1 | 40S ribosomal protein S20 [Oryza brachyantha] | 0 |
| P35686 | Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2 | 0 | |
| TrEMBL | J3MB14 | Ribosomal_S10 domain-containing protein OS=Oryza brachyantha OX=4533 GN=102718745 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology