Basic Information
Locus ID:
Oco12G001220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 1062178 | 1067338 | + | Oco12G001220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 43,990.75 Da | 32.28 | 91.27 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 301 | 349 | 0.00143255 | - |
| Pfam | PF00023 | Ankyrin repeat | 196 | 221 | 0.0062 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 176 | 1.2E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 46 | 75 | 5.2E-7 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 356 | 2.06E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 245 | 2.32E-43 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 111 | 240 | 5.9E-25 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 110 | 8.1E-24 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 364 | 1.5E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 301 | 349 | 0.0085 | IPR001841 |
| SMART | SM00248 | ANK_2a | 193 | 222 | 0.047 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.099 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 109 | 7.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 149 | 178 | 4.7E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.3E-6 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.86989 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 149 | 176 | 10.365044 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 136 | 9.08357 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.522278 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 301 | 350 | 10.069786 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.5057 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 193 | 219 | 9.038475 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 193 | 225 | 9.61777 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 136 | 9.065006 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 149 | 181 | 11.11353 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 98 | 8.507847 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 316 | 325 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 150 | 165 | 1.0E-4 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 209 | 223 | 1.0E-4 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 403 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_006656592.2 | probable E3 ubiquitin-protein ligase XBOS36 [Oryza brachyantha] | 0 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CP49 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016218 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology