Basic Information
Locus ID:
Oco12G001130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 994552 | 997768 | + | Oco12G001130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 27,592.50 Da | 60.42 | 56.12 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 158 | 240 | 1.91036E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 230 | 2.7E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 140 | 255 | 5.1E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 154 | 245 | 5.6E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 159 | 240 | 7.7E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 244 | 11.349401 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 83 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_040380714.1 | nuclear speckle RNA-binding protein A-like [Oryza brachyantha] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CPI1 | RRM domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016228 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology