Basic Information
Locus ID:
Oco12G001040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 924604 | 927297 | + | Oco12G001040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.33 | 29,241.38 Da | 46.74 | 68.47 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 209 | 245 | 1.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 247 | 4.04E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 258 | 6.0E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 211 | 260 | 9.863244 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 163 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015640871.1 | E3 ubiquitin-protein ligase BIG BROTHER [Oryza sativa Japonica Group] | 0 |
| P0C041 | Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0D9WL85 | RING-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.462, BH06.139, CH06.132 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506750, gene-QOZ80_6BG0458660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027570 |
| Poaceae | Oryza coarctata | 2 | Oco11G001120, Oco12G001040 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03580.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G018500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401902, Pt_Chr0401921 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G000090, Chr10G000170, Chr11G024190, Chr14G000910 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G119000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064410, gene_TRIDC7AG005680 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G441400.1, TraesCS7A02G054700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb269300_P003, Zm00001eb378700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40270, nbis-gene-51189 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29013, Zma_g31255 |