Basic Information
Locus ID:
Oco12G000090
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 108042 | 110527 | + | Oco12G000090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 65,161.89 Da | 40.90 | 97.67 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 230 | 272 | 2.0232E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 435 | 473 | 9.0E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 226 | 296 | 2.5E-25 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 353 | 391 | 1.9E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 301 | 4.01E-33 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 315 | 595 | 2.66E-50 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 299 | 4.0E-33 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 305 | 601 | 7.8E-55 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 229 | 292 | 4.9E-38 | IPR003613 |
| SMART | SM00185 | arm_5 | 434 | 474 | 0.015 | IPR000225 |
| SMART | SM00185 | arm_5 | 475 | 515 | 65.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 516 | 556 | 25.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 352 | 392 | 3.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 393 | 433 | 0.011 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 404 | 446 | 8.7324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 363 | 405 | 13.9474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 225 | 299 | 46.901669 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_006655674.2 | U-box domain-containing protein 12 [Oryza brachyantha] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DGM2 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011653 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology