Basic Information
Locus ID:
Oco11G016450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 22909318 | 22913102 | - | Oco11G016450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 47,087.35 Da | 46.43 | 91.06 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 254 | 384 | 2.06712E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 45 | 243 | 8.0707E-136 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 375 | 1.5E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 227 | 2.0E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 395 | 1.86E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 414 | 9.7E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 31 | 249 | 3.0E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 3.1E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 294 | 375 | 4.1E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 414 | 25.656265 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 41 | 69 | 10.920789 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 242 | 29.025476 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 188 | 196 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_025881899.1 | eukaryotic initiation factor 4A-1 [Oryza sativa Japonica Group] | 0 |
| P35683 | Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D3GKG6 | Eukaryotic initiation factor 4A-11 OS=Oryza barthii OX=65489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology