Basic Information
Locus ID:
Oco11G015200
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BEACH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 21760390 | 21791516 | - | Oco11G015200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 363,896.41 Da | 45.80 | 96.89 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06071 | Beach | 2626 | 2861 | 9.44863E-113 | IPR000409 |
| CDD | cd01201 | PH_BEACH | 2446 | 2592 | 8.84893E-21 | IPR023362 |
| CDD | cd13846 | CuRO_1_AAO_like_1 | 39 | 154 | 2.75058E-73 | IPR034273 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2996 | 3032 | 8.4E-6 | IPR001680 |
| Pfam | PF07731 | Multicopper oxidase | 405 | 504 | 4.9E-21 | IPR011706 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2455 | 2586 | 2.9E-13 | IPR023362 |
| Pfam | PF07732 | Multicopper oxidase | 44 | 157 | 4.3E-36 | IPR011707 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3047 | 3080 | 0.003 | IPR001680 |
| Pfam | PF00394 | Multicopper oxidase | 170 | 306 | 3.7E-35 | IPR001117 |
| Pfam | PF02138 | Beige/BEACH domain | 2626 | 2811 | 3.4E-78 | IPR000409 |
| Pfam | PF15787 | Domain of unknown function (DUF4704) | 1502 | 1775 | 3.1E-75 | IPR031570 |
| Pfam | PF02138 | Beige/BEACH domain | 2812 | 2861 | 9.1E-9 | IPR000409 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1378 | 1502 | 3.17E-11 | IPR013320 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 355 | 506 | 9.89E-31 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 34 | 184 | 2.34E-36 | IPR008972 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2966 | 3214 | 2.6E-38 | IPR036322 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 165 | 345 | 4.89E-37 | IPR008972 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2446 | 2591 | 1.41E-18 | - |
| SUPERFAMILY | SSF81837 | BEACH domain | 2611 | 2861 | 4.05E-97 | IPR036372 |
| Gene3D | G3DSA:2.30.29.30 | - | 2445 | 2585 | 2.5E-19 | IPR011993 |
| Gene3D | G3DSA:2.60.40.420 | - | 169 | 343 | 5.0E-33 | IPR008972 |
| Gene3D | G3DSA:2.130.10.10 | - | 2954 | 3222 | 1.9E-35 | IPR015943 |
| Gene3D | G3DSA:2.60.40.420 | - | 354 | 511 | 3.5E-28 | IPR008972 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2813 | 2861 | 2.5E-12 | IPR036372 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2617 | 2812 | 7.3E-89 | IPR036372 |
| Gene3D | G3DSA:2.60.40.420 | - | 37 | 158 | 3.7E-30 | IPR008972 |
| SMART | SM01026 | Beach_2 | 2625 | 2861 | 1.5E-145 | IPR000409 |
| SMART | SM00320 | WD40_4 | 2994 | 3033 | 7.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3045 | 3084 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3129 | 3167 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3170 | 3208 | 4.9 | IPR001680 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2442 | 2589 | 28.049665 | IPR023362 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3001 | 3032 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3001 | 3032 | 10.548323 | - |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2613 | 2903 | 78.54615 | IPR000409 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2398 | 2438 | - | - |
| Coils | Coil | Coil | 2238 | 2258 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58230.2 | - | 0 |
| RefSeq | XP_025881945.1 | BEACH domain-containing protein B isoform X2 [Oryza sativa Japonica Group] | 0 |
| F4I9T0 | BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 SV=1 | 0 | |
| TrEMBL | A0A0E0LEP4 | L-ascorbate oxidase-like protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10790 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23020 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023609 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005590, BVRB_8g186960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4253, Sbi_jg49553 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26743, Seu_jg5687 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000967 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10659, Sgl15910, Sgl15913 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012635, gene:ENSEOMG00000033156 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0009940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042080 |
| Apiaceae | Apium graveolens | 2 | Ag3G00077, Ag3G00078 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710848, gene-LOC103724019 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G18086 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G58230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023210m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g05370.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g045450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1062 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1146, Cgl03G1151 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.238 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026720 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01720 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.2704, AH07.454, BH06.2500, BH06.2502, BH06.2503 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0102520, gene-QOZ80_2BG0155830 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0566040.1, HORVU.MOREX.r3.7HG0734680.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_020718, gene-QYE76_036009, gene-QYE76_036010 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G003080, Oco04G003000, Oco11G015200 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g06720.1, LOC_Os02g06725.1, LOC_Os06g46480.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G047100, gene-BS78_10G231000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202503, Pt_Chr0202507, Pt_Chr0401235 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G020350, Chr10G020360, Chr10G020370, Chr10G020380 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G289700, Tel7E01G777900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG018570, gene_TRIDC6BG024550 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G137700.1, TraesCS6B02G166100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb207540_P001, Zm00001eb273770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29909, nbis-gene-9741 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14988 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1595, evm.TU.LG10.1315 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9408 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4929 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20554, nbisL1-mrna-20555, nbisL1-mrna-20557 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.226 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003726 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11495 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17054 |
| Salicaceae | Populus euphratica | 1 | populus_peu32130 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627641 |
| Solanaceae | Solanum chilense | 1 | SOLCI000394400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017626 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3890 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2294 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00980.v3.1 |