Basic Information
Locus ID:
Oco11G014230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 20395694 | 20400345 | - | Oco11G014230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 83,603.45 Da | 49.01 | 61.42 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 18 | 206 | 1.6E-25 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 19 | 226 | 2.16E-58 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 7 | 215 | 1.6E-63 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 209 | 37.013302 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 274 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.2 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_015643085.1 | ubiquitin carboxyl-terminal hydrolase 15 [Oryza sativa Japonica Group] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | Q67WC7 | Putative ubiquitin-specific protease 15 OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0085J13.24 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology