halophFGD

Basic Information

Locus ID: Oco11G012700

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG11	18627415	18630829	-	Oco11G012700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.56	92,022.72 Da	40.84	81.67	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04015	C2_plant_PLD	2	153	2.16007E-70	-
Pfam	PF00614	Phospholipase D Active site motif	669	695	1.6E-7	IPR001736
Pfam	PF00168	C2 domain	8	129	1.0E-11	IPR000008
Pfam	PF12357	Phospholipase D C terminal	742	813	7.8E-29	IPR024632
Pfam	PF00614	Phospholipase D Active site motif	333	377	2.6E-11	IPR001736
SUPERFAMILY	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	6	155	1.23E-14	IPR035892
SUPERFAMILY	SSF56024	Phospholipase D/nuclease	169	469	2.71E-32	-
SUPERFAMILY	SSF56024	Phospholipase D/nuclease	502	753	9.26E-30	-
Gene3D	G3DSA:3.30.870.10	Endonuclease Chain A	209	457	1.5E-20	-
Gene3D	G3DSA:2.60.40.150	C2 domain	6	161	5.2E-11	IPR035892
Gene3D	G3DSA:3.30.870.10	Endonuclease Chain A	488	709	6.1E-22	-
SMART	SM00239	C2_3c	9	129	3.0E-10	IPR000008
SMART	SM00155	pld_4	668	695	1.1E-7	IPR001736
SMART	SM00155	pld_4	333	377	9.9E-4	IPR001736
PIRSF	PIRSF036470	PLD_plant	1	822	0.0	IPR011402
ProSiteProfiles	PS50035	Phospholipase D phosphodiesterase active site profile.	668	695	15.197198	IPR001736
ProSiteProfiles	PS50035	Phospholipase D phosphodiesterase active site profile.	333	377	9.224799	IPR001736
ProSiteProfiles	PS50004	C2 domain profile.	1	130	12.885983	IPR000008

Gene Ontology

Biological Process:

GO:0046470 (phosphatidylcholine metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004630 (phospholipase D activity) GO:0005509 (calcium ion binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K01115 (phospholipase D1/2 [EC:3.1.4.4])

Pathway:

ko00564 (Glycerophospholipid metabolism) map00564 (Glycerophospholipid metabolism) ko00565 (Ether lipid metabolism) map00565 (Ether lipid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway) ko04024 (cAMP signaling pathway) map04024 (cAMP signaling pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04072 (Phospholipase D signaling pathway) map04072 (Phospholipase D signaling pathway) map04666 (Fc gamma R-mediated phagocytosis)

Reaction:

R01310 (Phosphatidylcholine + H2O <=> Phosphatidate + Choline) R02051 (Phosphatidylethanolamine + H2O <=> Ethanolamine + Phosphatidate) R07385 (O-1-Alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine + H2O <=> 2-Acyl-1-(1-alkenyl)-sn-glycero-3-phosphate + Ethanolamine)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15730.1	phospholipase D alpha 1. Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.
RefSeq	XP_015643893.1	phospholipase D alpha 2 [Oryza sativa Japonica Group]
Swiss-Prot	P93844	Phospholipase D alpha 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLD2 PE=2 SV=2
TrEMBL	I1Q3H0	Phospholipase D OS=Oryza glaberrima OX=4538 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13506, jg18234, jg25422, jg33062, jg4617
Aizoaceae	Mesembryanthemum crystallinum	4	gene_25211, gene_26201, gene_8982, gene_8983
Amaranthaceae	Atriplex hortensis	1	Ah014344
Amaranthaceae	Beta vulgaris	3	BVRB_2g030360, BVRB_8g194400, BVRB_9g219660
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg11563, Sbi_jg21169, Sbi_jg22636, Sbi_jg40699 ... Sbi_jg46505
Amaranthaceae	Salicornia europaea	3	Seu_jg16523, Seu_jg20815, Seu_jg2263
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005180, GOSA_00007965
Amaranthaceae	Suaeda glauca	10	Sgl42036, Sgl46805, Sgl55931, Sgl61936, Sgl62312, Sgl62313 ... Sgl67018, Sgl67019, Sgl67162, Sgl67163
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010368, gene:ENSEOMG00000016986 ... gene:ENSEOMG00000034763, gene:ENSEOMG00000036345, gene:ENSEOMG00000045714, gene:ENSEOMG00000052511
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0021190, CQ.Regalona.r1.2AG0022980 ... CQ.Regalona.r1.7BG0009970, CQ.Regalona.r1.8AG0021980, CQ.Regalona.r1.8BG0020480, CQ.Regalona.r1.9AG0014680
Anacardiaceae	Pistacia vera	4	pistato.v30128150, pistato.v30128660, pistato.v30250010 ... pistato.v30250020
Apiaceae	Apium graveolens	6	Ag11G04430, Ag3G01791, Ag3G02759, Ag4G00120, Ag9G01167 ... AgUnG00277
Arecaceae	Cocos nucifera	3	scaffold003993G000030, scaffold078790G000010 ... scaffold129896G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103697701, gene-LOC103708746, gene-LOC103718527
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2586.V1.1, AsparagusV1_06.1132.V1.1 ... AsparagusV1_08.726.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G28165, Ftri18G10833, Ftri4G25710, Ftri8G12945 ... Ftri9G03990, Ftri9G13234, Ftri9G14095
Brassicaceae	Arabidopsis thaliana	3	AT1G52570.1, AT3G15730.1, AT5G25370.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003659m.g.v1.0, Thhalv10003665m.g.v1.0 ... Thhalv10011246m.g.v1.0, Thhalv10020083m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g39130.v2.2, Sp2g22170.v2.2, Sp3g14080.v2.2
Brassicaceae	Brassica nigra	5	BniB01g049100.2N, BniB02g077940.2N, BniB04g003890.2N ... BniB06g028090.2N, BniB07g053980.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0300, Ceq04G2339, Ceq06G0622, Ceq06G0624
Casuarinaceae	Casuarina glauca	4	Cgl02G0313, Cgl04G2544, Cgl06G0642, Cgl06G0644
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g13580, gene.Cymno12g01480, gene.Cymno16g01570
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g32530, gene.Thate06g14980, gene.Thate06g14990 ... gene.Thate08g00110
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3753, nbisL1-mrna-3798, nbisL1-mrna-4502
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.471, evm.TU.LG07.1445
Plantaginaceae	Plantago ovata	4	Pov_00010020, Pov_00015477, Pov_00018237, Pov_00027752
Plumbaginaceae	Limonium bicolor	3	Lb1G05007, Lb3G18304, Lb6G30183
Poaceae	Echinochloa crus-galli	20	AH01.2473, AH01.3417, AH02.489, AH04.1997, AH05.1125 ... AH06.2231, BH01.2819, BH01.3770, BH02.507, BH04.2018, BH04.2019, BH05.1364, BH07.3996, CH01.3023, CH01.4019, CH02.551, CH04.2355, CH04.2358, CH05.1326, CH06.2254
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0011450, gene-QOZ80_1BG0060080 ... gene-QOZ80_3AG0250960, gene-QOZ80_3BG0277350, gene-QOZ80_5AG0403150, gene-QOZ80_5BG0451570, gene-QOZ80_6AG0544420, gene-QOZ80_6BG0497970
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0026950.1, HORVU.MOREX.r3.1HG0083580.1 ... HORVU.MOREX.r3.1HG0083620.1, HORVU.MOREX.r3.3HG0241720.1, HORVU.MOREX.r3.7HG0719720.1
Poaceae	Lolium multiflorum	5	gene-QYE76_009722, gene-QYE76_009782, gene-QYE76_034966 ... gene-QYE76_050645, gene-QYE76_067503
Poaceae	Oryza coarctata	7	Oco02G002970, Oco05G015120, Oco06G015570, Oco09G003360 ... Oco10G003310, Oco11G012700, Oco12G012570
Poaceae	Oryza sativa	6	LOC_Os01g07760.2, LOC_Os03g27370.1, LOC_Os05g07880.1 ... LOC_Os06g40170.1, LOC_Os06g40180.1, LOC_Os06g40190.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G333200, gene-BS78_01G333300 ... gene-BS78_03G047000, gene-BS78_06G281900, gene-BS78_09G067700, gene-BS78_10G185200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0400646, Pt_Chr0400669, Pt_Chr0402322, Pt_Chr0501673 ... Pt_Chr0501724
Poaceae	Sporobolus alterniflorus	9	Chr01G024950, Chr02G019690, Chr03G005140, Chr08G005590 ... Chr0G008080, Chr0G021820, Chr10G017610, Chr18G000130, Chr22G014190
Poaceae	Thinopyrum elongatum	6	Tel1E01G212700, Tel1E01G610100, Tel3E01G214800 ... Tel4E01G612700, Tel7E01G638200, Tel7E01G950500
Poaceae	Triticum dicoccoides	11	gene_TRIDC1AG014060, gene_TRIDC1AG054890 ... gene_TRIDC1BG020210, gene_TRIDC1BG062860, gene_TRIDC3AG016260, gene_TRIDC3BG021150, gene_TRIDC7AG052570, gene_TRIDC7AG075910, gene_TRIDC7AG075940, gene_TRIDC7BG045030, gene_TRIDC7BG072580
Poaceae	Triticum aestivum	18	TraesCS1A02G115300.1, TraesCS1A02G373100.2 ... TraesCS1B02G135200.1, TraesCS1B02G393300.3, TraesCS1D02G116700.1, TraesCS1D02G379900.2, TraesCS3A02G130000.1, TraesCS3B02G149100.1, TraesCS3D02G130900.1, TraesCS4B02G377600.1, TraesCS7A02G376500.3, TraesCS7A02G545000.1, TraesCS7B02G277900.1, TraesCS7B02G468200.1, TraesCS7B02G468300.1, TraesCS7D02G372800.1, TraesCS7D02G531300.1, TraesCSU02G145400.1
Poaceae	Zea mays	6	Zm00001eb019050_P001, Zm00001eb122860_P005 ... Zm00001eb283150_P001, Zm00001eb336760_P001, Zm00001eb386300_P002, Zm00001eb392550_P001
Poaceae	Zoysia japonica	7	nbis-gene-10087, nbis-gene-11632, nbis-gene-12027 ... nbis-gene-13148, nbis-gene-18092, nbis-gene-23554, nbis-gene-32983
Poaceae	Zoysia macrostachya	5	Zma_g1078, Zma_g27776, Zma_g30786, Zma_g7692, Zma_g8852
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2504, evm.TU.LG06.1244, evm.TU.LG07.1768 ... evm.TU.LG11.592, evm.TU.LG15.1415, evm.TU.LG18.631, evm.TU.LG26.394, evm.TU.LG26.395
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g00090, gene.Posoc02g32070, gene.Posoc03g25390
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.1178 ... evm.TU.Scaffold_10_RagTag.853, evm.TU.Scaffold_18_RagTag.430, evm.TU.Scaffold_4_RagTag.2311
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13629, nbisL1-mrna-25130, nbisL1-mrna-28089 ... nbisL1-mrna-6815
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10508, nbisL1-mrna-17153, nbisL1-mrna-2617 ... nbisL1-mrna-2708
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-21753, nbisL1-mrna-5054, nbisL1-mrna-7865 ... nbisL1-mrna-9099
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000004l.166, evm.TU.utg000004l.333 ... evm.TU.utg000008l.1359, evm.TU.utg000023l.195
Rhizophoraceae	Kandelia obovata	3	Maker00004120, Maker00004225, Maker00018878
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16333, nbisL1-mrna-1823, nbisL1-mrna-3778 ... nbisL1-mrna-7284
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-21205, nbisL1-mrna-21386, nbisL1-mrna-22342 ... nbisL1-mrna-7865
Salicaceae	Populus euphratica	6	populus_peu05770, populus_peu12134, populus_peu12893 ... populus_peu28358, populus_peu33504, populus_peu37304
Solanaceae	Lycium barbarum	4	gene-LOC132598714, gene-LOC132632989, gene-LOC132635798 ... gene-LOC132636212
Solanaceae	Solanum chilense	5	SOLCI000532500, SOLCI004535400, SOLCI004756100 ... SOLCI005130100, SOLCI006736300
Solanaceae	Solanum pennellii	5	gene-LOC107007662, gene-LOC107013926, gene-LOC107023178 ... gene-LOC107027070, gene-LOC107028403
Tamaricaceae	Reaumuria soongarica	2	gene_10142, gene_6485
Tamaricaceae	Tamarix chinensis	4	TC01G1518, TC08G2193, TC12G0238, TC12G0264
Zosteraceae	Zostera marina	2	Zosma01g20090.v3.1, Zosma05g07840.v3.1