Basic Information
Locus ID:
Oco11G012660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 18565155 | 18568346 | - | Oco11G012660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 68,580.76 Da | 46.94 | 106.89 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 276 | 298 | 0.9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 224 | 247 | 0.0027 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 141 | 452 | 3.53E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 348 | 596 | 6.8E-38 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 101 | 2.35E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 264 | 457 | 4.6E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 263 | 9.9E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 458 | 513 | 6.9E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 514 | 644 | 1.6E-22 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 276 | 301 | 2.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 515 | 540 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 356 | 381 | 3.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 224 | 249 | 3.7E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 382 | 407 | 62.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 542 | 567 | 0.0012 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 488 | 513 | 0.016 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 408 | 433 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 568 | 592 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 250 | 275 | 6.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 198 | 223 | 0.36 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 462 | 487 | 1.9 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_015643083.1 | EIN3-binding F-box protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CU97 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology