Basic Information
Locus ID:
Oco11G010420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 15299121 | 15299723 | + | Oco11G010420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.42 | 21,931.94 Da | 69.73 | 69.30 | -0.39 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034591785.1 | RING-H2 finger protein ATL32-like [Setaria viridis] | 0 |
| TrEMBL | A0A6G1CRY5 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_019863 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1890, BH06.1735 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541980, gene-QOZ80_6BG0495190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709440.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034091, gene-QYE76_042759 |
| Poaceae | Oryza coarctata | 3 | Oco03G006760, Oco04G007030, Oco11G010420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g14990.1, LOC_Os06g34470.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G155300, gene-BS78_10G155400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400153, Pt_Chr0400167 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G015750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G571100 |
| Poaceae | Triticum aestivum | 5 | TraesCS7A02G347700.1, TraesCS7A02G563700.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10265, nbis-gene-10276 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30667, Zma_g30671 |