Basic Information
Locus ID:
Oco11G010410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 15290329 | 15290988 | + | Oco11G010410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 23,589.52 Da | 58.79 | 81.19 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 141 | 169 | 1.8E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 179 | 3.53E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 186 | 6.7E-10 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 121 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044432113.1 | probable E3 ubiquitin-protein ligase ATL45 [Triticum aestivum] | 0 |
| TrEMBL | A0A0D9WQY3 | RING-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0010s00026.v1.0 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530200, gene-QOZ80_6BG0484110 |
| Poaceae | Oryza coarctata | 1 | Oco11G010410 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G011340, Chr21G011510 |
| Poaceae | Triticum aestivum | 1 | TraesCS7B02G235500.1.cds1 |