Basic Information
Locus ID:
Oco11G010330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 15246765 | 15248289 | + | Oco11G010330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 34,226.68 Da | 75.79 | 84.89 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 131 | 174 | 1.01314E-19 | - |
| Pfam | PF13639 | Ring finger domain | 131 | 174 | 1.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 176 | 1.19E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 179 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 132 | 173 | 9.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 174 | 12.282736 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 241 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_040381196.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Oryza brachyantha] | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0LCA2 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1881, CH06.1924 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0495060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709270.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_019878, gene-QYE76_019879, gene-QYE76_033977 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G010330, Oco12G010450 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400172, Pt_Chr0400181 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028430, Chr05G006120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048570, gene_TRIDC7BG038760 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G348200.1.cds1, TraesCS7B02G234500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10297 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30648, Zma_g32887 |