halophFGD

Basic Information

Locus ID: Oco11G010010

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Arabinogalactan peptide

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG11	14364153	14366244	+	Oco11G010010

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.50	6,964.17 Da	30.54	130.74	1.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06376	Arabinogalactan peptide	24	57	4.9E-14	IPR009424

Best hit

Source	Best Hit ID	Description
TAIR	AT2G46330.1	arabinogalactan protein 16. Encodes arabinogalactan protein (AGP16).
RefSeq	XP_024312750.1	arabinogalactan peptide 16-like [Brachypodium distachyon]
Swiss-Prot	O82337	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1
TrEMBL	I1GYC8	Arabinogalactan peptide 16 OS=Brachypodium distachyon OX=15368 GN=BRADI_1g39290v3 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg23532, jg4745
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9066
Amaranthaceae	Atriplex hortensis	2	Ah014510, Ah018719
Amaranthaceae	Beta vulgaris	3	BVRB_3g052530, BVRB_8g196120, BVRB_8g196160
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24942, Sbi_jg8801
Amaranthaceae	Salicornia europaea	1	Seu_jg19804
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007834
Amaranthaceae	Suaeda glauca	2	Sgl42183, Sgl46952
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0004290, CQ.Regalona.r1.3BG0004440 ... CQ.Regalona.r1.8AG0020450, CQ.Regalona.r1.8BG0021990
Apiaceae	Apium graveolens	3	Ag10G02543, Ag5G01693, Ag8G00200
Arecaceae	Cocos nucifera	3	COCNU_03G015990, COCNU_14G000110, scaffold023725G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103702938, gene-LOC103709178, gene-LOC113462799
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.3181.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G32274, Ftri4G10105, Ftri7G01908, Ftri7G04948 ... Ftri8G07351
Brassicaceae	Arabidopsis thaliana	4	AT2G46330.1, AT3G61640.1, AT5G24105.1, AT5G53250.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001752m.g.v1.0, Thhalv10015233m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g28370.v2.2, Sp5g01770.v2.2, Sp6g15410.v2.2
Brassicaceae	Brassica nigra	9	BniB02g031510.2N, BniB02g077040.2N, BniB04g003360.2N ... BniB05g032860.2N, BniB06g061900.2N, BniB07g040320.2N, BniB08g016790.2N, BniB08g030110.2N, BniS06172g130.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G1229, Ceq03G0204, Ceq06G1473, Ceq06G1477, Ceq06G1592 ... Ceq09G1556
Casuarinaceae	Casuarina glauca	4	Cgl02G1268, Cgl03G0251, Cgl06G1531, Cgl06G1657
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g12320, gene.Cymno06g02940, gene.Cymno12g01800
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g17640, gene.Thate03g24990, gene.Thate09g13690 ... gene.Thate09g15230
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2844, evm.TU.LG04.751, evm.TU.LG10.1499
Plantaginaceae	Plantago ovata	2	Pov_00005318, Pov_00005424
Poaceae	Echinochloa crus-galli	13	AH02.2190, AH02.2583, AH05.610, AH06.1778, AH07.1146 ... BH02.2270, BH02.2686, BH05.662, BH06.1660, CH02.2423, CH02.3848, CH05.760, CH07.1006
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0027170, gene-QOZ80_1BG0077400 ... gene-QOZ80_2AG0108480, gene-QOZ80_5AG0401380, gene-QOZ80_5BG0449970, gene-QOZ80_6AG0530410, gene-QOZ80_6BG0484210
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0026190.1, HORVU.MOREX.r3.2HG0114790.1 ... HORVU.MOREX.r3.3HG0276880.1, HORVU.MOREX.r3.3HG0290200.1, HORVU.MOREX.r3.7HG0710400.1
Poaceae	Lolium multiflorum	3	gene-QYE76_010526, gene-QYE76_022406, gene-QYE76_034010
Poaceae	Oryza coarctata	10	Oco01G016190, Oco02G016440, Oco03G007190, Oco04G005640 ... Oco04G007530, Oco09G004710, Oco10G004060, Oco11G010010, Oco12G009970, Oco20G000970
Poaceae	Oryza sativa	5	LOC_Os01g46850.1, LOC_Os02g11880.1, LOC_Os02g16500.1 ... LOC_Os05g12580.1, LOC_Os10g06970.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G179600, gene-BS78_03G216900 ... gene-BS78_04G113600, gene-BS78_09G072000, gene-BS78_09G086900, gene-BS78_10G143400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0205364, Pt_Chr0400100, Pt_Chr0501481, Pt_Chr0605005
Poaceae	Sporobolus alterniflorus	11	Chr02G016580, Chr03G010090, Chr03G012260, Chr06G030800 ... Chr08G012530, Chr10G013010, Chr11G009250, Chr15G022260, Chr18G004600, Chr21G011560, Chr22G012710
Poaceae	Thinopyrum elongatum	3	Tel1E01G210000, Tel3E01G408600, Tel7E01G578600
Poaceae	Triticum dicoccoides	5	gene_TRIDC1AG014360, gene_TRIDC1BG019680 ... gene_TRIDC3BG039970, gene_TRIDC7AG047980, gene_TRIDC7BG039480
Poaceae	Triticum aestivum	8	TraesCS1A02G113100.1, TraesCS1B02G133200.1 ... TraesCS1D02G114500.1, TraesCS3A02G238200.1, TraesCS3B02G266700.1, TraesCS7A02G343600.1, TraesCS7B02G239500.1, TraesCS7D02G336000.1
Poaceae	Zea mays	4	Zm00001eb203920_P002, Zm00001eb237880_P001 ... Zm00001eb350580_P001, Zm00001eb359480_P001
Poaceae	Zoysia japonica	5	nbis-gene-17953, nbis-gene-29038, nbis-gene-29632 ... nbis-gene-34158, nbis-gene-50941
Poaceae	Zoysia macrostachya	4	Zma_g10582, Zma_g12556, Zma_g15376, Zma_g27869
Portulacaceae	Portulaca oleracea	1	evm.TU.LG17.418
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g23050, gene.Posoc03g24290, gene.Posoc09g08540
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.109, evm.TU.Scaffold_5_RagTag.587
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10762, nbisL1-mrna-12759, nbisL1-mrna-13134 ... nbisL1-mrna-18281, nbisL1-mrna-22353, nbisL1-mrna-25600, nbisL1-mrna-29291
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-14820, nbisL1-mrna-15290, nbisL1-mrna-19434 ... nbisL1-mrna-20532, nbisL1-mrna-4392
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-16797, nbisL1-mrna-16801, nbisL1-mrna-20374 ... nbisL1-mrna-2226, nbisL1-mrna-22475, nbisL1-mrna-4729, nbisL1-mrna-7380, nbisL1-mrna-8604
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.223, evm.TU.utg000006l.439
Rhizophoraceae	Kandelia obovata	7	Maker00000938, Maker00001531, Maker00008610, Maker00013172 ... Maker00014374, Maker00014993, Maker00017709
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10255, nbisL1-mrna-15985, nbisL1-mrna-1720 ... nbisL1-mrna-3567
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-10968, nbisL1-mrna-14777, nbisL1-mrna-19575 ... nbisL1-mrna-20516, nbisL1-mrna-21048, nbisL1-mrna-5461, nbisL1-mrna-6737, nbisL1-mrna-7234
Salicaceae	Populus euphratica	1	populus_peu34499
Solanaceae	Lycium barbarum	2	gene-LOC132638057, gene-LOC132645486
Solanaceae	Solanum chilense	4	SOLCI002064900, SOLCI002865600, SOLCI003906800 ... SOLCI005350900
Solanaceae	Solanum pennellii	1	gene-LOC114074443
Tamaricaceae	Reaumuria soongarica	5	gene_5248, gene_747, gene_748, gene_7998, gene_8953
Tamaricaceae	Tamarix chinensis	1	TC03G2141
Zosteraceae	Zostera marina	3	Zosma04g04540.v3.1, Zosma05g03440.v3.1, Zosma06g10470.v3.1