Basic Information
Locus ID:
Oco11G009660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 13452689 | 13455106 | + | Oco11G009660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 51,731.74 Da | 47.74 | 81.64 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 240 | 293 | 4.86532E-11 | - |
| Pfam | PF12906 | RING-variant domain | 240 | 292 | 6.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 235 | 296 | 1.3E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 296 | 1.5E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 239 | 293 | 5.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 232 | 299 | 17.762224 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 168 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025882237.1 | uncharacterized protein LOC9266525 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1CXW9 | RING-CH-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology