Basic Information
Locus ID:
Oco11G007860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 9027035 | 9034396 | + | Oco11G007860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 72,181.61 Da | 37.95 | 60.84 | -1.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13921 | Myb-like DNA-binding domain | 434 | 492 | 4.8E-9 | - |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 432 | 496 | 1.68E-8 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 524 | 601 | 7.37E-7 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 475 | 548 | 1.7E-9 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 435 | 474 | 9.4E-7 | - |
| SMART | SM00717 | sant | 550 | 601 | 6.6 | IPR001005 |
| SMART | SM00717 | sant | 430 | 477 | 0.24 | IPR001005 |
| SMART | SM00717 | sant | 480 | 546 | 4.1 | IPR001005 |
| SMART | SM00717 | sant | 357 | 428 | 0.063 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 433 | 475 | 6.829499 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 432 | 479 | 10.626884 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 546 | 599 | 7.955902 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 476 | 544 | 7.084971 | IPR001005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41020.1 | myb family transcription factor. | 0 |
| RefSeq | XP_015643783.1 | RNA polymerase I termination factor isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q0JHU7 | Transcription factor MYB3R-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB3R-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CVT3 | Cyclin-D-binding Myb-like transcription factor 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033009 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13033, jg13041 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18355 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016576, Ah024458 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g147130, BVRB_6g147180 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12825, Sbi_jg20559, Sbi_jg23211, Sbi_jg53062 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17036, Seu_jg8808 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00009541, GOSA_00018676, GOSA_00022992 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl03348, Sgl08418, Sgl34042, Sgl34175, Sgl39429, Sgl39469 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014196, gene:ENSEOMG00000031086 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008780, CQ.Regalona.r1.8BG0009060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30220740 |
| Apiaceae | Apium graveolens | 2 | Ag3G00519, Ag7G00473 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G003190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711972 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.328.V1.1, AsparagusV1_07.3467.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G19746, Ftri4G07021 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G41020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027663m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g00890.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g025450.2N, BniB01g025490.2N, BniB01g026750.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0211 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g11280, gene.Cymno15g02830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.873 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002987, Pov_00017560, Pov_00030641 |
| Plumbaginaceae | Limonium bicolor | 8 | Lb1G07287, Lb2G08527, Lb2G10135, Lb3G20048, Lb3G20049 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1236, BH06.1286, CH06.1476 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0674530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004389, gene-QYE76_054473 |
| Poaceae | Oryza coarctata | 4 | Oco09G004370, Oco10G004420, Oco11G007860, Oco24G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g19980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G055900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0306903, Pt_Chr0306904, Pt_Chr0404411, Pt_Chr0700219 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G000240, Chr24G012200, Chr24G012220, Chr27G017400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G402400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG025630, gene_TRIDC5BG026770 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G153800.1.cds1, TraesCS7A02G219600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb172100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-74 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7092 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.141, evm.TU.LG03.3, evm.TU.LG10.751 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06840 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13045 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17265, nbisL1-mrna-17307 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000025l.58, add.evm.TU.utg000025l.76 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012213, Maker00012222 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20150, nbisL1-mrna-20172 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-22970, nbisL1-mrna-9070, nbisL1-mrna-9071 |
| Salicaceae | Populus euphratica | 3 | populus_peu28842, populus_peu34803, populus_peu34804 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132609790, gene-LOC132609794, gene-LOC132612294 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI005823700, SOLCI007127000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107012193, gene-LOC107027910, gene-LOC107028977 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.21960_chr08_-, STRG.25011_chr08_-, gene_13140 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3603, TC01G3610 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11740.v3.1 |