Basic Information
Locus ID:
Oco11G004980
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 4699477 | 4700424 | - | Oco11G004980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 34,087.78 Da | 78.58 | 67.78 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 175 | 217 | 6.06953E-25 | - |
| Pfam | PF13639 | Ring finger domain | 175 | 217 | 3.7E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 17 | 51 | 4.4E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 224 | 3.79E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 224 | 1.2E-24 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 216 | 7.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 217 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 120 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040380674.1 | E3 ubiquitin-protein ligase RING1-like [Oryza brachyantha] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0L975 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology