Basic Information
Locus ID:
Oco11G004080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 3547640 | 3555407 | + | Oco11G004080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 90,620.23 Da | 60.54 | 81.43 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04718 | BAH_plant_2 | 167 | 316 | 6.18583E-82 | - |
| CDD | cd00009 | AAA | 425 | 596 | 2.44024E-4 | - |
| Pfam | PF00628 | PHD-finger | 147 | 192 | 6.8E-8 | IPR019787 |
| Pfam | PF01426 | BAH domain | 226 | 312 | 5.5E-12 | IPR001025 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 449 | 594 | 4.2E-18 | IPR003959 |
| Pfam | PF17872 | AAA lid domain | 621 | 656 | 3.9E-11 | IPR041083 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 128 | 194 | 7.97E-15 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 414 | 657 | 7.14E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 400 | 595 | 6.6E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 208 | 4.9E-14 | IPR013083 |
| Gene3D | G3DSA:1.10.8.60 | - | 596 | 688 | 5.5E-20 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 88 | 334 | 4.1E-28 | IPR043151 |
| SMART | SM00439 | BAH_4 | 149 | 319 | 2.2E-8 | IPR001025 |
| SMART | SM00382 | AAA_5 | 444 | 598 | 2.8E-7 | IPR003593 |
| SMART | SM00249 | PHD_3 | 146 | 191 | 2.0E-7 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 202 | 319 | 18.766191 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 144 | 193 | 9.632401 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 147 | 190 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14700.1 | origin recognition complex 1. Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator. | 0 |
| RefSeq | XP_052160130.1 | origin of replication complex subunit 1 [Oryza glaberrima] | 0 |
| Q5SMU7 | Origin of replication complex subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ORC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CP84 | Origin recognition complex subunit 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011811 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8564 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004979 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17982, Sbi_jg61068, Sbi_jg61069, Sbi_jg62605 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1187, Seu_jg22822 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014432 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23864, Sgl25026, Sgl29035, Sgl30166 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008680, gene:ENSEOMG00000009062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001390, CQ.Regalona.r1.4BG0001470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052930 |
| Apiaceae | Apium graveolens | 1 | Ag1G00759 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715915 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2200.V1.1, AsparagusV1_08.1022.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G17122 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G12620.1, AT4G14700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029404m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g048440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1916 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2392, Cgl05G1916 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0095s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2419 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.246 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014838, Pov_00017121 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14292 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.585, BH06.639, CH06.652 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511740, gene-QOZ80_6BG0463650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0659760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028144 |
| Poaceae | Oryza coarctata | 2 | Oco11G004080, Oco12G004090 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G068600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405206 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021270, Chr14G002990, Chr21G002210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G308600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG018650, gene_TRIDC7BG008130 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G151700.1, TraesCS7B02G055600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb278360_P002, Zm00001eb374440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4979 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29247 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG22.636, evm.TU.LG25.643 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1053 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29966 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16417 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.637 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4537 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20746 |
| Salicaceae | Populus euphratica | 1 | populus_peu35886 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617372, gene-LOC132626529 |
| Solanaceae | Solanum chilense | 1 | SOLCI003341300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014942 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5542 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2090 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08950.v3.1 |