Basic Information
Locus ID:
Oco11G003910
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 3384865 | 3389605 | - | Oco11G003910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 68,931.25 Da | 45.50 | 96.11 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 124 | 6.32272E-45 | - |
| Pfam | PF03000 | NPH3 family | 207 | 465 | 2.0E-75 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 116 | 4.9E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 116 | 1.49E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 122 | 1.2E-10 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 207 | 489 | 85.220734 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.282 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 627 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development. | 0 |
| RefSeq | XP_040381194.1 | BTB/POZ domain-containing protein NPY1-like [Oryza brachyantha] | 0 |
| Q8H1D3 | Phototropic-responsive NPH3 family protein NPY1 OS=Arabidopsis thaliana OX=3702 GN=NPY1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0DY06 | BTB/POZ domain-containing protein NPY1 OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23765 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031834 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30344, Sbi_jg43755 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18138 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025599 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl70068 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013433, gene:ENSEOMG00000017030 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001350, CQ.Regalona.r1.2BG0002440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250990 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005000, COCNU_11G012080 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710435, gene-LOC103717194, gene-LOC120106191 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1765.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G05643 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29630.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085550.2N, BniB05g006190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2407 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2611 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g07110, gene.Cymno05g08520, gene.Cymno06g07590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09890 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-326 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1531 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013761 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04751 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1945, AH06.567, BH03.1986, BH06.621, CH03.2279 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0511520, gene-QOZ80_6AG0535390 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0483030.1, HORVU.MOREX.r3.7HG0659200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005166, gene-QYE76_028174 |
| Poaceae | Oryza coarctata | 4 | Oco11G003910, Oco12G003940, Oco17G005070, Oco18G005110 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g08550.1, LOC_Os09g25330.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G185100, gene-BS78_10G066800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0405224, Pt_Chr0405245, Pt_Chr0702168 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G009820, Chr11G021380, Chr14G002910, Chr14G014140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G366700, Tel7E01G303300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG035840, gene_TRIDC5BG037680 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G223800.1, TraesCS5B02G222700.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb099640_P001, Zm00001eb313010_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20057, nbis-gene-30804, nbis-gene-34887 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30332, Zma_g31479, Zma_g32401 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.2554, evm.TU.LG17.1596, evm.TU.LG18.355 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18800, gene.Posoc03g13070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1449 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-819 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4287 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.785 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000726 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2264 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9708 |
| Salicaceae | Populus euphratica | 2 | populus_peu04682, populus_peu13004 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609403 |
| Solanaceae | Solanum chilense | 1 | SOLCI003296000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028899 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1333_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1069 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17690.v3.1 |