Basic Information
Locus ID:
Oco11G002870
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 2427267 | 2429872 | + | Oco11G002870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 15,157.03 Da | 38.32 | 66.59 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 59 | 108 | 2.5E-9 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 108 | 4.41E-13 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 9 | 60 | 7.59E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 8 | 56 | 6.0E-5 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 120 | 3.6E-14 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 60 | 113 | 6.4E-9 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01660.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015642915.1 | U-box domain-containing protein 70-like [Oryza sativa Japonica Group] | 0 |
| P0C6E7 | Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=PUB55 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0L859 | U-box domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G56030.1, AT1G56040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g025480.2N |
| Poaceae | Oryza coarctata | 1 | Oco11G002870 |