Basic Information
Locus ID:
Oco11G002860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 2422029 | 2426673 | + | Oco11G002860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 26,014.07 Da | 37.38 | 64.11 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13432 | Tetratricopeptide repeat | 124 | 174 | 4.5E-5 | - |
| Pfam | PF13181 | Tetratricopeptide repeat | 23 | 50 | 0.17 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 116 | 227 | 4.24E-28 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 2 | 114 | 7.91E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 113 | 4.7E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 114 | 229 | 8.4E-26 | IPR011990 |
| SMART | SM00028 | tpr_5 | 117 | 150 | 1.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 21 | 54 | 1.9 | IPR019734 |
| SMART | SM00028 | tpr_5 | 151 | 184 | 8.2 | IPR019734 |
| SMART | SM00028 | tpr_5 | 185 | 218 | 0.63 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 117 | 150 | 8.7619 | IPR019734 |
| Coils | Coil | Coil | 94 | 114 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006656663.2 | U-box domain-containing protein 70-like [Oryza brachyantha] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | J3MBH5 | U-box domain-containing protein OS=Oryza brachyantha OX=4533 GN=102703876 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |