Basic Information
Locus ID:
Oco11G001310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 1076244 | 1081213 | + | Oco11G001310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 43,536.15 Da | 38.66 | 88.62 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 176 | 1.9E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 46 | 75 | 1.4E-6 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 196 | 225 | 7.5E-5 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 246 | 1.07E-47 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 351 | 1.83E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 139 | 1.8E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 140 | 253 | 6.4E-21 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 284 | 361 | 4.0E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 16.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 5.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.19 | IPR002110 |
| SMART | SM00248 | ANK_2a | 193 | 222 | 0.003 | IPR002110 |
| SMART | SM00248 | ANK_2a | 149 | 178 | 3.4E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 296 | 344 | 0.0077 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.84318 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.442684 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 149 | 176 | 10.28545 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.34544 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 193 | 225 | 10.4992 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 98 | 8.507847 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 296 | 345 | 10.232069 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 193 | 219 | 9.781353 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 149 | 181 | 11.00669 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 311 | 320 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 209 | 223 | 1.7E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 150 | 165 | 1.7E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 390 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_006656592.2 | probable E3 ubiquitin-protein ligase XBOS36 [Oryza brachyantha] | 0 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CP49 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016218 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology