Basic Information
Locus ID:
Oco11G001120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 937503 | 945489 | + | Oco11G001120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 29,112.24 Da | 58.23 | 65.35 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 209 | 251 | 2.62351E-17 | - |
| Pfam | PF13639 | Ring finger domain | 208 | 251 | 5.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 255 | 6.13E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 255 | 8.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 210 | 250 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 210 | 251 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 161 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_015640871.1 | E3 ubiquitin-protein ligase BIG BROTHER [Oryza sativa Japonica Group] | 0 |
| Q08CG8 | RING finger protein 44 OS=Danio rerio OX=7955 GN=rnf44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CQQ5 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.462, BH06.139, CH06.132 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506750, gene-QOZ80_6BG0458660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027570 |
| Poaceae | Oryza coarctata | 2 | Oco11G001120, Oco12G001040 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03580.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G018500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401902, Pt_Chr0401921 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G000090, Chr10G000170, Chr11G024190, Chr14G000910 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G119000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064410, gene_TRIDC7AG005680 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G441400.1, TraesCS7A02G054700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb269300_P003, Zm00001eb378700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40270, nbis-gene-51189 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29013, Zma_g31255 |