Basic Information
Locus ID:
Oco11G000450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
transcription regulatory region sequence-specific DNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 455038 | 468439 | + | Oco11G000450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 25,029.30 Da | 54.54 | 78.15 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 19 | 78 | 1.3186E-31 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | 2.5E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 96 | 179 | 3.1E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 12 | 90 | 6.28E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 21 | 104 | 2.9E-25 | IPR036879 |
| SMART | SM00432 | madsneu2 | 11 | 68 | 1.2E-30 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 9 | 69 | 27.165163 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 96 | 188 | 12.206253 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 11 | 65 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 46 | 67 | 4.4E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 11 | 31 | 4.4E-25 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 31 | 46 | 4.4E-25 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 24 | - | - |
| Coils | Coil | Coil | 159 | 179 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 0 |
| RefSeq | XP_015642540.1 | MADS-box transcription factor 50-like isoform X1 [Oryza sativa Japonica Group] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1DHL0 | MADS-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011694 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology