Basic Information
Locus ID:
Oco11G000150
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 221937 | 223553 | + | Oco11G000150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 45,324.63 Da | 42.10 | 95.76 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 89 | 154 | 6.74822E-17 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 189 | 227 | 1.8E-11 | IPR000225 |
| Pfam | PF04564 | U-box domain | 88 | 109 | 1.0E-5 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 148 | 1.73E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 169 | 406 | 1.51E-31 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 166 | 265 | 3.0E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 165 | 1.3E-12 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 266 | 413 | 1.8E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 88 | 181 | 0.0019 | IPR003613 |
| SMART | SM00185 | arm_5 | 188 | 228 | 1.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 286 | 326 | 210.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 327 | 367 | 33.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 199 | 241 | 14.2624 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 84 | 109 | 9.563967 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 413 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_006655674.2 | U-box domain-containing protein 12 [Oryza brachyantha] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0DVD6 | RING-type E3 ubiquitin transferase OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology