Basic Information
Locus ID:
Oco11G000130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG11 | 197900 | 204922 | - | Oco11G000130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 110,896.20 Da | 54.34 | 77.76 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 600 | 650 | 8.6E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 416 | 471 | 8.1E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 660 | 711 | 1.59E-11 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 915 | 1010 | 2.86E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 748 | 806 | 1.86E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 750 | 811 | 4.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 652 | 742 | 2.1E-13 | IPR013083 |
| SMART | SM00249 | PHD_3 | 666 | 706 | 6.6E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 752 | 809 | 0.0064 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 753 | 808 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 667 | 705 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015643591.1 | uncharacterized protein LOC4339828 isoform X2 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1DHH0 | PHD-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011648 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology