Basic Information
Locus ID:
Oco10G018560
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 23307151 | 23308371 | + | Oco10G018560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 43,777.65 Da | 62.40 | 88.13 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 123 | 166 | 4.89988E-17 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 171 | 3.26E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 175 | 6.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.769585 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 406 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040380505.1 | E3 ubiquitin-protein ligase ATL42-like [Oryza brachyantha] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1ETC2 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_036790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology