Basic Information
Locus ID:
Oco10G017810
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 22627917 | 22639911 | - | Oco10G017810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 95,508.26 Da | 41.62 | 85.09 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 546 | 679 | 1.44284E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 548 | 678 | 1.8E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 701 | 743 | 1.5E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 508 | 740 | 1.33E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 506 | 679 | 7.4E-95 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 680 | 758 | 7.4E-95 | - |
| SMART | SM00382 | AAA_5 | 544 | 681 | 6.7E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 651 | 670 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 805 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_052155873.1 | uncharacterized AAA domain-containing protein C16E9.10c-like [Oryza glaberrima] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0L695 | AAA domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology